Detecting intrinsic slow variables in stochastic dynamical systems by anisotropic diffusion maps

Publication Year
2009

Type

Journal Article
Abstract

Nonlinear independent component analysis is combined with diffusion-map data analysis techniques to detect good observables in high-dimensional dynamic data. These detections are achieved by integrating local principal component analysis of simulation bursts by using eigenvectors of a Markov matrix describing anisotropic diffusion. The widely applicable procedure, a crucial step in model reduction approaches, is illustrated on stochastic chemical reaction network simulations.

Journal
Proceedings of the National Academy of Sciences of the United States of America
Volume
106
Issue
38
Pages
16090-16095
Date Published
09/2009
ISBN
0027-8424
Short Title
Proc. Natl. Acad. Sci. U. S. A.