Laing, Frewen, and Kevrekidis. (2007) 2007. “Coarse-Grained Dynamics of an Activity Bump in a Neural Field Model”. Nonlinearity 20 (9): 2127-46.

Ferguson, Andrew, Athanassios Panagiotopoulos, Ioannis Kevrekidis, and Pablo Debenedetti. (2011) 2011. “Nonlinear Dimensionality Reduction in Molecular Simulation: The Diffusion Map Approach”. Chemical Physics Letters 509 (1-3): 1-11.

Dsilva, Carmeline, Bomyi Lim, Hang Lu, Amit Singer, Ioannis Kevrekidis, and Stanislav Shvartsman. (2015) 2015. “Temporal Ordering and Registration of Images in Studies of Developmental Dynamics”. Development 142 (9): 1717-24.

Singer, Amit, Radek Erban, Ioannis Kevrekidis, and Ronald Coifman. (2009) 2009. “Detecting Intrinsic Slow Variables in Stochastic Dynamical Systems by Anisotropic Diffusion Maps”. Proceedings of the National Academy of Sciences of the United States of America 106 (38): 16090-95.

Marschler, Christian, Jens Starke, Ping Liu, and Ioannis Kevrekidis. (2014) 2014. “Coarse-Grained Particle Model for Pedestrian Flow Using Diffusion Maps”. Physical Review E 89 (1): 013304.