Laing, Carlo, and Ioannis Kevrekidis. (2015) 2015. “Equation-Free Analysis of Spike-Timing-Dependent Plasticity”. Biological Cybernetics 109: 701-14. Reference Link
Lee, Seungjoon, Ioannis Kevrekidis, and George Em Karniadakis. (2015) 2015. “Resilient Algorithms for Reconstructing and Simulating Gappy Flow Fields in CFD”. Fluid Dynamics Research 47. Reference Link
Kattis, Assimakis A., Alexander Holiday, Ana-Andreea Stoica, and Ioannis Kevrekidis. (2016) 2016. “Modeling Epidemics on Adaptively Evolving Networks: A Data-Mining Perspective”. Virulence 7: 153-62. Publisher’s Version: Modeling epidemics on adaptively evolving networks: A data-mining perspective. Reference Link
Li, Xingjie, Matthew Williams, Ioannis Kevrekidis, and Govind Menon. (2016) 2016. “Coarse Graining, Dynamic Renormalization and the Kinetic Theory of Shock Clustering”. Nonlinearity 29: 947-61. Publisher’s Version: Coarse graining, dynamic renormalization and the kinetic theory of shock clustering. Reference Link
Chiavazzo, Eliodoro, Charles W. Gear, Carmeline J. Dsilva, Neta Rabin, and Ioannis Kevrekidis. 2014. “Reduced Models in Chemical Kinetics via Nonlinear Data-Mining”. Processes 2: 112-40. doi:10.3390/pr2010112. Reference Link
Bavarian, Mona, Ioannis Kevrekidis, Jay B. Benziger, and Masoud Soroush. 2013. “Modeling and Bifurcation Analysis of a Coionic Conducting Solid Oxide Fuel Cell”. INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH 52 (9): 3165-77. doi:10.1021/ie3009814. Reference Link
Laing, Carlo R., Yu Zou, Ben Smith, and Ioannis Kevrekidis. 2012. “Managing Heterogeneity in the Study of Neural Oscillator Dynamics”. Journal of Mathematical Neuroscience 2 (5). doi:10.1186/2190-8567-2-5. Reference Link
Moon, Sung Joon, Katherine Cook, Karthikeyan Rajendran, Ioannis Kevrekidis, Jaime Cisternas, and Carlo R. Laing. 2015. “Coarse-Grained Clustering Dynamics of Heterogeneously Coupled Neurons”. Journal of Mathematical Neuroscience 5 (2): 2. doi:10.1186/2190-8567-5-2. Reference Link
Liu, Ping, Hannah R. Safford, Iain D. Couzin, and Ioannis Kevrekidis. 2014. “Coarse-Grained Variables for Particle-Based Models: Diffusion Maps and Animal Swarming Simulations”. Computational Particle Mechanics 1 (4): 425-40. doi:10.1007/s40571-014-0030-7. Reference Link
Bold, Katherine A., Karthikeyan Rajendran, Balázs Ráth, and Ioannis Kevrekidis. 2014. “An Equation-Free Approach to Coarse-Graining the Dynamics of Networks”. Journal of Computational Dynamics 1 (1): 111-34. doi:10.3934/jcd.2014.1.111. Reference Link
FROUZAKIS, CHRISTOS, Raymond Adomaitis, and Ioannis Kevrekidis. 1991. “RESONANCE PHENOMENA IN AN ADAPTIVELY-CONTROLLED SYSTEM”. International Journal of Bifurcation and ChaosInternational Journal of Bifurcation and Chaos 01 (01): 83-106. Referenced from www.worldscientific.com: RESONANCE PHENOMENA IN AN ADAPTIVELY-CONTROLLED SYSTEM. Reference Link
Barkley, Dwight, and Ioannis Kevrekidis. (1994) 1994. “A Dynamical Systems Approach to Spiral Wave Dynamics”. ChaosChaos 4 (3): 453-60. Reference Link
Maroudas, Dimitrios, Miguel Amat, Ioannis Kevrekidis, Derosa, and Cagin. 2011. Coarse Molecular-Dynamics Analysis of Structural Transitions in Solid Materials. Boca Raton: Crc Press-Taylor & Francis Group. Reference Link
Cisternas, Jaime, Thomas Wasylenko, Ioannis Kevrekidis, Descalzi, Clerc, Residori, and Assanto. 2011. Lurching Waves in Thalamic Neuronal Networks. New York: Springer. Reference Link
Al-Mohssen, Husain, Nicolas Hadjiconstantinou, and Ioannis Kevrekidis. 2006. Acceleration Methods for Coarse-Grained Numerical Solution of the Boltzmann Equation. New York: Amer Soc Mechanical Engineers. Reference Link
Kolpas, Allison, Jeff Moehlis, and Ioannis Kevrekidis. (2007) 2007. “Coarse-Grained Analysis of Stochasticity-Induced Switching Between Collective Motion States”. Proceedings of the National Academy of Sciences of the United States of America 104 (14): 5931-35. Reference Link
Bavarian, Mona, Ioannis Kevrekidis, Jay Benziger, and Masoud Soroush. (2013) 2013. “Modeling and Bifurcation Analysis of a Coionic Conducting Solid Oxide Fuel Cell”. Industrial & Engineering Chemistry Research 52 (9): 3165-77. Reference Link
Wasylenko, Thomas, Jaime Cisternas, Carlo Laing, and Ioannis Kevrekidis. (2010) 2010. “Bifurcations of Lurching Waves in a Thalamic Neuronal Network”. Biological Cybernetics 103 (6): 447-62. Reference Link
Cheah, May, Ioannis Kevrekidis, and Jay Benziger. (2013) 2013. “Water Slug Formation and Motion in Gas Flow Channels: The Effects of Geometry, Surface Wettability, And Gravity”. Langmuir 29 (31): 9918-34. Reference Link
Punckt, Christian, Linda Jan, Peng Jiang, Thomas Frewen, Dudley Saville, Ioannis Kevrekidis, and Ilhan Aksay. (2012) 2012. “Autonomous Colloidal Crystallization in a Galvanic Microreactor”. Journal of Applied Physics 112 (7): 074905. Reference Link
Makeev, Alexei, and Ioannis Kevrekidis. (2009) 2009. “Coarse-Graining the Computations of Surface Reactions: Nonlinear Dynamics from Atomistic Simulators”. Surface Science 603 (10-12): 1696-1705. Reference Link
Kavousanakis, Michail, Jitendra Kanodia, Yoosik Kim, Ioannis Kevrekidis, and Stanislav Shvartsman. (2010) 2010. “A Compartmental Model for the Bicoid Gradient”. Developmental Biology 345 (1): 12-17. Reference Link
Moon, Sung Joon, and Ioannis Kevrekidis. (2006) 2006. “An Equation-Free Approach to Coupled Oscillator Dynamics: The Kuramoto Model Example”. International Journal of Bifurcation and Chaos 16 (7): 2043-52. Reference Link
Sonday, Benjamin, Mikko Haataja, and Ioannis Kevrekidis. (2009) 2009. “Coarse-Graining the Dynamics of a Driven Interface in the Presence of Mobile Impurities: Effective Description via Diffusion Maps”. Physical Review E 80 (3): 031102. Reference Link
Nedialkova, Lilia, Miguel Amat, Ioannis Kevrekidis, and Gerhard Hummer. (2014) 2014. “Diffusion Maps, Clustering and Fuzzy Markov Modeling in Peptide Folding Transitions”. Journal of Chemical Physics 141 (11): 114102. Reference Link
Amat, Miguel, Ioannis Kevrekidis, and Dimitrios Maroudas. (2006) 2006. “Coarse Molecular-Dynamics Determination of the Onset of Structural Transitions: Melting of Crystalline Solids”. Physical Review B 74 (13): 132201. Reference Link
Ahuja, Sunil, Victor Yakhot, and Ioannis Kevrekidis. (2008) 2008. “Computational Coarse Graining of a Randomly Forced One-Dimensional Burgers Equation”. Physics of Fluids 20 (3): 035111. Reference Link
Chen, Ting, Suzanne D’Addio, Michael Kennedy, Aleksander Swietlow, Ioannis Kevrekidis, Athanassios Panagiotopoulos, and Robert Prud’homme. (2009) 2009. “Protected Peptide Nanoparticles: Experiments and Brownian Dynamics Simulations of the Energetics of Assembly”. Nano Letters 9 (6): 2218-22. Reference Link
Siettos, Constantinos, Ioannis Kevrekidis, and Nikolaos Kazantzis. (2006) 2006. “An Equation-Free Approach to Nonlinear Control: Coarse Feedback Linearization With Pole-Placement”. International Journal of Bifurcation and Chaos 16 (7): 2029-41. Reference Link
Amat, Miguel, Marco Arienti, Vladimir Fonoberov, Ioannis Kevrekidis, and Dimitrios Maroudas. (2008) 2008. “Coarse Molecular-Dynamics Analysis of an Order-to-Disorder Transformation of a Krypton Monolayer on Graphite”. Journal of Chemical Physics 129 (18): 184106. Reference Link
Xue, Yuzhen, Peter Ludovice, Martha Grover, Lilia Nedialkova, Carmeline Dsilva, and Ioannis Kevrekidis. (2013) 2013. “State Reduction in Molecular Simulations”. Computers & Chemical Engineering 51: 102-10. Reference Link
Ferguson, Andrew, Athanassios Panagiotopoulos, Ioannis Kevrekidis, and Pablo Debenedetti. (2011) 2011. “Nonlinear Dimensionality Reduction in Molecular Simulation: The Diffusion Map Approach”. Chemical Physics Letters 509 (1-3): 1-11. Reference Link
Tsoumanis, Andreas, Karthikeyan Rajendran, Constantinos Siettos, Ioannis Kevrekidis, and Simos. 2011. “Coarse-Graining the Dynamics of Network Evolution: The Rise and Fall of a Networked Society”. In Numerical Analysis and Applied Mathematics Icnaam 2011: International Conference on Numerical Analysis and Applied Math. Vol. 1389. Melville: Amer Inst Physics. Reference Link
Makeev, Alexei, Elena Kurkina, and Ioannis Kevrekidis. (2012) 2012. “Kinetic Monte Carlo Simulations of Travelling Pulses and Spiral Waves in the Lattice Lotka-Volterra Model”. Chaos 22 (2): 023141. Reference Link
Zou, Yu, Michail Kavousanakis, Ioannis Kevrekidis, and Rodney Fox. (2010) 2010. “Coarse-Grained Computation for Particle Coagulation and Sintering Processes by Linking Quadrature Method of Moments With Monte-Carlo”. Journal of Computational Physics 229 (14): 5299-5314. Reference Link
Zou, Yu, Paul Torrens, Roger Ghanem, and Ioannis Kevrekidis. 2012. “Accelerating Agent-Based Computation of Complex Urban Systems”. International Journal of Geographical Information Science 26 (10): 1917-37. Reference Link
Givon, Dror, and Ioannis Kevrekidis. 2008. “MULTISCALE INTEGRATION SCHEMES FOR JUMP-DIFFUSION SYSTEMS”. Multiscale Modeling & Simulation 7 (2): 495-516. Reference Link
Gounaris, Chrysanthos, Karthikeyan Rajendran, Ioannis Kevrekidis, and Christodoulos Floudas. (2011) 2011. “Generation of Networks With Prescribed Degree-Dependent Clustering”. Optimization Letters 5 (3): 435-51. Reference Link
Samaey, Giovanni, Wim Vanroose, Dirk Roose, and Ioannis Kevrekidis. 2008. “Newton-Krylov Solvers for the Equation-Free Computation of Coarse Traveling Waves”. Computer Methods in Applied Mechanics and Engineering 197 (43-44): 3480-91. Reference Link
Zagaris, Antonios, Christophe Vandekerckhove, William Gear, Tasso Kaper, and Ioannis Kevrekidis. (2012) 2012. “STABILITY AND STABILIZATION OF THE CONSTRAINED RUNS SCHEMES FOR EQUATION-FREE PROJECTION TO A SLOW MANIFOLD”. Discrete and Continuous Dynamical Systems 32 (8): 2759-2803. Reference Link
Gauthier, Eric, Thomas Hellstern, Ioannis Kevrekidis, and Jay Benziger. (2012) 2012. “Drop Detachment and Motion on Fuel Cell Electrode Materials”. Acs Applied Materials & Interfaces 4 (2): 761-71. Reference Link
Benziger, Jay, Joanne Chia, Erin Kimball, and Ioannis Kevrekidis. 2007. “Reaction Dynamics in a Parallel Flow Channel PEM Fuel Cell”. Journal of the Electrochemical Society 154 (8): B835-B844. Reference Link
Murisic, Nebojsa, Vincent Hakim, Ioannis Kevrekidis, Stanislav Shvartsman, and Basile Audoly. (2015) 2015. “From Discrete to Continuum Models of Three-Dimensional Deformations in Epithelial Sheets”. Biophysical Journal 109 (1): 154-63. Reference Link
Alexander, Francis, Gregory Johnson, Gregory Eyink, and Ioannis Kevrekidis. (2008) 2008. “Equation-Free Implementation of Statistical Moment Closures”. Physical Review E 77 (2): 026701. Reference Link
Dsilva, Carmeline, Bomyi Lim, Hang Lu, Amit Singer, Ioannis Kevrekidis, and Stanislav Shvartsman. (2015) 2015. “Temporal Ordering and Registration of Images in Studies of Developmental Dynamics”. Development 142 (9): 1717-24. Reference Link
Dsilva, Carmeline, Ronen Talmon, Neta Rabin, Ronald Coifman, and Ioannis Kevrekidis. (2013) 2013. “Nonlinear Intrinsic Variables and State Reconstruction in Multiscale Simulations”. Journal of Chemical Physics 139 (18): 184109. Reference Link
Erban, Radek, Thomas Frewen, Xiao Wang, Timothy Elston, Ronald Coifman, Boaz Nadler, and Ioannis Kevrekidis. (2007) 2007. “Variable-Free Exploration of Stochastic Models: A Gene Regulatory Network Example”. Journal of Chemical Physics 126 (15): 155103. Reference Link
Liu, Ping, Giovanni Samaey, William Gear, and Ioannis Kevrekidis. (2015) 2015. “On the Acceleration of Spatially Distributed Agent-Based Computations: A Patch Dynamics Scheme”. Applied Numerical Mathematics 92: 54-69. Reference Link
Kevrekidis, Ioannis, and Giovanni Samaey. 2009. “Equation-Free Multiscale Computation: Algorithms and Applications”. Annual Review of Physical Chemistry 60: 321-44. Reference Link
Spaeth, Justin, Ioannis Kevrekidis, and Athanassios Panagiotopoulos. (2011) 2011. “A Comparison of Implicit- and Explicit-Solvent Simulations of Self-Assembly in Block Copolymer and Solute Systems”. Journal of Chemical Physics 134 (16): 164902. Reference Link