Villoutreix, Paul, Joakim Anden, Bomyi Lim, Hang Lu, IoannisG. Kevrekidis, Amit Singer, and Stanislav Y. Shvartsman. 2017. “Synthesizing Developmental Trajectories”. PLoS Comput. Biol. 13. Public Library of Science: e1005742/1. Publisher’s Version: Synthesizing developmental trajectories.

Sonday, Benjamin, Amit Singer, and Ioannis Kevrekidis. (2013) 2013. “Noisy Dynamic Simulations in the Presence of Symmetry: Data Alignment and Model Reduction”. Computers & Mathematics With Applications 65 (10): 1535-57.

Singer, Amit, Radek Erban, Ioannis Kevrekidis, and Ronald Coifman. (2009) 2009. “Detecting Intrinsic Slow Variables in Stochastic Dynamical Systems by Anisotropic Diffusion Maps”. Proceedings of the National Academy of Sciences of the United States of America 106 (38): 16090-95.

Dsilva, Carmeline, Bomyi Lim, Hang Lu, Amit Singer, Ioannis Kevrekidis, and Stanislav Shvartsman. (2015) 2015. “Temporal Ordering and Registration of Images in Studies of Developmental Dynamics”. Development 142 (9): 1717-24.