Ferguson, Andrew, Athanassios Panagiotopoulos, Pablo Debenedetti, and Ioannis Kevrekidis. (2011) 2011. “Integrating Diffusion Maps With Umbrella Sampling: Application to Alanine Dipeptide”. Journal of Chemical Physics 134 (13): 135103. Reference Link
Hummer, G., and I. G. Kevrekidis. (2003) 2003. “Coarse Molecular Dynamics of a Peptide Fragment: Free Energy, Kinetics, and Long-Time Dynamics Computations”. Journal of Chemical Physics 118 (23): 10762-73. Reference Link
Dsilva, Carmeline, Ronen Talmon, Neta Rabin, Ronald Coifman, and Ioannis Kevrekidis. (2013) 2013. “Nonlinear Intrinsic Variables and State Reconstruction in Multiscale Simulations”. Journal of Chemical Physics 139 (18): 184109. Reference Link