Ferguson, Andrew, Pablo Debenedetti, Ioannis Kevrekidis, and Athanassios Panagiotopoulos. (2010) 2010. “Systematic Identification of Order Parameters in Biophysical Systems”. Abstracts of Papers of the American Chemical Society 240.

Ferguson, Andrew, Athanassios Panagiotopoulos, Pablo Debenedetti, and Ioannis Kevrekidis. (2011) 2011. “Integrating Diffusion Maps With Umbrella Sampling: Application to Alanine Dipeptide”. Journal of Chemical Physics 134 (13): 135103.

Ferguson, Andrew, Athanassios Panagiotopoulos, Pablo Debenedetti, and Ioannis Kevrekidis. (2010) 2010. “Systematic Determination of Order Parameters for Chain Dynamics Using Diffusion Maps”. Proceedings of the National Academy of Sciences of the United States of America 107 (31): 13597-602.

Kim, Sang Beom, Carmeline Dsilva, Ioannis Kevrekidis, and Pablo Debenedetti. (2015) 2015. “Systematic Characterization of Protein Folding Pathways Using Diffusion Maps: Application to Trp-Cage Miniprotein”. Journal of Chemical Physics 142 (8): 085101.

Ferguson, Andrew, Athanassios Panagiotopoulos, Ioannis Kevrekidis, and Pablo Debenedetti. (2011) 2011. “Nonlinear Dimensionality Reduction in Molecular Simulation: The Diffusion Map Approach”. Chemical Physics Letters 509 (1-3): 1-11.